PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00428.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 367aa    MW: 40808.6 Da    PI: 8.9304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00428.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-55171451129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL +kv +  ++  ++i+evd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkat
  Rsa1.0_00428.1_g00008.1  17 LPPGFRFHPTDEELITHYLLRKVLDGCFSS-RAIAEVDLNKCEPWQLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKAT 101
                              79*************************999.89***************99999********************************* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkd+e++s+ +++lvg+kktLvfykgrapkgek++Wvmheyrle
  Rsa1.0_00428.1_g00008.1 102 GKDREIYSSkTSALVGMKKTLVFYKGRAPKGEKSSWVMHEYRLE 145
                              *******9856778****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-634169IPR003441NAC domain
PROSITE profilePS5100560.01717169IPR003441NAC domain
PfamPF023656.7E-2918144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW  60
QLPGKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIYSS KTSALVGMKK  120
TLVFYKGRAP KGEKSSWVMH EYRLEGKFSY HFISRSSKDE WVISRVFKKT GLANTGASAG  180
ASISISSGTG SSKKTKIPSS ISTTYREQPS SPSSVSLPPL LDPTTTLGYT DSSWSYDSRN  240
TNTTVTNTAI TEHVSCFSTA ATTTALGLDV NVDSFNHLLP PAPPGFDPFP RFVSRNVSPL  300
SNFRSFQENF SHFPYFGSSS ASTMTTSANL PSFHGGTGMN YWLQTTAEEN ETKAGLLNGG  360
LDCVWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-521717417170NO APICAL MERISTEM PROTEIN
1ut4_B2e-521717417170NO APICAL MERISTEM PROTEIN
1ut7_A2e-521717417170NO APICAL MERISTEM PROTEIN
1ut7_B2e-521717417170NO APICAL MERISTEM PROTEIN
3swm_A2e-521717420173NAC domain-containing protein 19
3swm_B2e-521717420173NAC domain-containing protein 19
3swm_C2e-521717420173NAC domain-containing protein 19
3swm_D2e-521717420173NAC domain-containing protein 19
3swp_A2e-521717420173NAC domain-containing protein 19
3swp_B2e-521717420173NAC domain-containing protein 19
3swp_C2e-521717420173NAC domain-containing protein 19
3swp_D2e-521717420173NAC domain-containing protein 19
4dul_A2e-521717417170NAC domain-containing protein 19
4dul_B2e-521717417170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4351620.0FJ435162.1 Cardamine hirsuta CUP-SHAPED COTYLEDON2 (CUC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127127.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
SwissprotO040170.0NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A078GQJ10.0A0A078GQJ1_BRANA; BnaA02g09970D protein
TrEMBLM4E1N50.0M4E1N5_BRARP; Uncharacterized protein
STRINGBra022685.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66152745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-177NAC family protein